Developmental Brain Disorder Gene Database
LoF Variant Gene
Gene
Search
Tier
1
SETD1A
HGNC:29010 (protein-coding gene)
SET domain containing 1A, histone lysine methyltransferase
- Unique Cases:
- 12
- Disorders:
- ID, ASD, EP, SCZ
- Last Updated:
- November 4, 2024
Gene Summary:
- DBD Genes Classification
- SETD1A is a High Confidence candidate gene classified as Tier 1. Tier 1 genes have three or more de novo pathogenic loss-of-function variants.
- Gene Function
- Histone methyltransferase that catalyzes methyl group transfer from S-adenosyl-L-methionine to the epsilon-amino group of 'Lys-4' of histone H3 (H3K4) via a non-processive mechanism (PubMed:12670868, PubMed:25561738). Part of chromatin remodeling machinery, forms H3K4me1, H3K4me2 and H3K4me3 methylation marks at active chromatin sites where transcription and DNA repair take place (PubMed:29937342, PubMed:31197650, PubMed:32346159). Responsible for H3K4me3 enriched promoters and transcriptional p... (Source: Uniprot)
- Previous symbols
- No previous symbols
- Alias symbols
- KIAA0339, Set1, KMT2F, SET1A
- Chromosomal Location
- 16p11.2
- Genomic Coordinates
- GRCh37:chr16:30968615-30995985
- GRCh38:chr16:30956618-30984664
- Associated Disorders
- Intellectual Disability, Autism, Epilepsy
Cases:
Publications:
| Eising E et. al., A set of regulatory genes co-expressed in embryonic human brain is implicated in disrupted speech development., Mol Psychiatry, 2019 |
| Guipponi M et. al., Exome sequencing in 53 sporadic cases of schizophrenia identifies 18 putative candidate genes., PLoS One, 2014 |
| Feliciano P et. al., Exome sequencing of 457 autism families recruited online provides evidence for autism risk genes., NPJ Genom Med, 2019 |
| Takata A et. al., Loss-of-function variants in schizophrenia risk and SETD1A as a candidate susceptibility gene., Neuron, 2014 |
| Singh T et. al., Rare loss-of-function variants in SETD1A are associated with schizophrenia and developmental disorders., Nat Neurosci, 2016 |
External References:
NCBI: Gene
Integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
Gene Reviews
An international point-of-care resource for busy clinicians, provides clinically relevant and medically actionable information for inherited conditions in a standardized journal-style format, covering diagnosis, management, and genetic counseling for patients and their families.
DECIPHER
DECIPHER (DatabasE of genomiC varIation and Phenotype in Humans using Ensembl Resources) is an interactive web-based database which incorporates a suite of tools designed to aid the interpretation of genomic variants.
DECIPHER enhances clinical diagnosis by retrieving information from a variety of bioinformatics resources relevant to the variant found in the patient.
SFARI
SFARI Gene is an evolving online database designed to permit quick entrée into the genetics of autism, and to help researchers track the ever-expanding genetic risk factors that emerge in the literature.
ClinGen
ClinGen is a National Institutes of Health (NIH)-funded resource dedicated to building an authoritative central resource that defines the clinical relevance of genes and variants for use in precision medicine and research.
GenCC
The GenCC DB provides information pertaining to the validity of gene-disease relationships, with a current focus on Mendelian diseases.
gnomAD
The Genome Aggregation Database (gnomAD) is a resource developed by an international coalition of investigators, with the goal of aggregating and harmonizing both exome and genome sequencing data from a wide variety of large-scale sequencing projects, and making summary data available for the wider scientific community.