Developmental Brain Disorder Gene Database

Missense Gene

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Missense

KDM6B

HGNC:29012 (protein-coding gene)

lysine demethylase 6B

Unique Cases:
2
Disorders:
ID
Last Updated:
November 4, 2024

Gene Summary:

Gene Function
Histone demethylase that specifically demethylates 'Lys-27' of histone H3, thereby playing a central role in histone code (PubMed:17713478, PubMed:17825402, PubMed:17851529, PubMed:18003914). Demethylates trimethylated and dimethylated H3 'Lys-27' (PubMed:17713478, PubMed:17825402, PubMed:17851529, PubMed:18003914). Plays a central role in regulation of posterior development, by regulating HOX gene expression (PubMed:17851529). Involved in inflammatory response by participating in macrophage dif... (Source: Uniprot)
Previous symbols
JMJD3
Alias symbols
KIAA0346
Chromosomal Location
17p13.1
Genomic Coordinates
GRCh37:chr17:7743235-7758118
GRCh38:chr17:7834210-7854796
Associated Disorders
Intellectual Disability

Predictive Scores:

HI Score (Decipher)

40.32

pLI (gnomAD)

1.00

LOEUF (gnomAD)

0.14

Classifications from External Sources:

SFARI Score (SFARI)

1

DDG2P Classification (DDG2P)

Limited

ClinGen Classification (ClinGen)

Limited1

Definitive1

GenCC Classification (GenCC)

Strong3 Limited1 Definitive1

Publications:

NCBI: Gene

Integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.

Gene Reviews

An international point-of-care resource for busy clinicians, provides clinically relevant and medically actionable information for inherited conditions in a standardized journal-style format, covering diagnosis, management, and genetic counseling for patients and their families.

DECIPHER

DECIPHER (DatabasE of genomiC varIation and Phenotype in Humans using Ensembl Resources) is an interactive web-based database which incorporates a suite of tools designed to aid the interpretation of genomic variants. DECIPHER enhances clinical diagnosis by retrieving information from a variety of bioinformatics resources relevant to the variant found in the patient.

SFARI

SFARI Gene is an evolving online database designed to permit quick entrée into the genetics of autism, and to help researchers track the ever-expanding genetic risk factors that emerge in the literature.

ClinGen

ClinGen is a National Institutes of Health (NIH)-funded resource dedicated to building an authoritative central resource that defines the clinical relevance of genes and variants for use in precision medicine and research.

GenCC

The GenCC DB provides information pertaining to the validity of gene-disease relationships, with a current focus on Mendelian diseases.

gnomAD

The Genome Aggregation Database (gnomAD) is a resource developed by an international coalition of investigators, with the goal of aggregating and harmonizing both exome and genome sequencing data from a wide variety of large-scale sequencing projects, and making summary data available for the wider scientific community.
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