Developmental Brain Disorder Gene Database
Missense Gene
Gene
Search
Missense
PRKDC
HGNC:9413 (protein-coding gene)
protein kinase, DNA-activated, catalytic subunit
- Unique Cases:
- 5
- Disorders:
- ID, ASD, SCZ
- Last Updated:
- November 4, 2024
Gene Summary:
- Gene Function
- Serine/threonine-protein kinase that acts as a molecular sensor for DNA damage (PubMed:11955432, PubMed:12649176, PubMed:14734805, PubMed:33854234). Involved in DNA non-homologous end joining (NHEJ) required for double-strand break (DSB) repair and V(D)J recombination (PubMed:11955432, PubMed:12649176, PubMed:14734805, PubMed:33854234, PubMed:34352203). Must be bound to DNA to express its catalytic properties (PubMed:11955432). Promotes processing of hairpin DNA structures in V(D)J recombination... (Source: Uniprot)
- Previous symbols
- HYRC, HYRC1
- Alias symbols
- DNPK1, p350, DNAPK, XRCC7, DNA-PKcs, DNAPKc, DNA-PKC, p460
- Chromosomal Location
- 8q11.21
- Genomic Coordinates
- GRCh37:chr8:48685669-48872743
- GRCh38:chr8:47773111-47960136
- Associated Disorders
- Intellectual Disability, Autism
Predictive Scores:
- HI Score (Decipher)
10.36
- pLI (gnomAD)
1.00
- LOEUF (gnomAD)
0.19
Classifications from External Sources:
- SFARI Score (SFARI)
2
- DDG2P Classification (DDG2P)
No Classification
- ClinGen Classification (ClinGen)
Definitive1
- GenCC Classification (GenCC)
Limited1 Strong1 Supportive1 Definitive1
Cases:
Publications:
| Howrigan DP et. al., Exome sequencing in schizophrenia-affected parent-offspring trios reveals risk conferred by protein-coding de novo mutations., Nat Neurosci, 2020 |
| Coe BP et. al., Neurodevelopmental disease genes implicated by de novo mutation and copy number variation morbidity., Nat Genet, 2019 |
| Al-Kasbi G et. al., The diagnostic yield, candidate genes, and pitfalls for a genetic study of intellectual disability in 118 middle eastern families., Sci Rep, 2022 |
External References:
NCBI: Gene
Integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
Gene Reviews
An international point-of-care resource for busy clinicians, provides clinically relevant and medically actionable information for inherited conditions in a standardized journal-style format, covering diagnosis, management, and genetic counseling for patients and their families.
DECIPHER
DECIPHER (DatabasE of genomiC varIation and Phenotype in Humans using Ensembl Resources) is an interactive web-based database which incorporates a suite of tools designed to aid the interpretation of genomic variants.
DECIPHER enhances clinical diagnosis by retrieving information from a variety of bioinformatics resources relevant to the variant found in the patient.
SFARI
SFARI Gene is an evolving online database designed to permit quick entrée into the genetics of autism, and to help researchers track the ever-expanding genetic risk factors that emerge in the literature.
ClinGen
ClinGen is a National Institutes of Health (NIH)-funded resource dedicated to building an authoritative central resource that defines the clinical relevance of genes and variants for use in precision medicine and research.
GenCC
The GenCC DB provides information pertaining to the validity of gene-disease relationships, with a current focus on Mendelian diseases.
gnomAD
The Genome Aggregation Database (gnomAD) is a resource developed by an international coalition of investigators, with the goal of aggregating and harmonizing both exome and genome sequencing data from a wide variety of large-scale sequencing projects, and making summary data available for the wider scientific community.